You understand the problem with "studies that agree with me are right, and studies that disagree with me are wrong", do you not? The OP who wrote the article is a vegan advocate.
And your NY Times article is interesting. But I come from the scientific world, and attacking scientific rigor of a reputable institution requires more than an NY Times article for me. Worse, you're only showing an argument targeting one university, one that (as far as I can tell dodging their damn paywall) isn't making any formal accusations of dishonesty or citing any bad research. If you're going to try to convince the educated world of a grand collegiate conspiracy to create junk science, you might as well be selling flat earth. Sorry.
This angle feels a lot like far-right rhetoric to me now. I'm not sure if you saw that. Of course there would be farming businesses funding a department of agricultural sustainability. Who do you think reaps the benefit of cheap and sustainable farming practices? Oh yeah, the farmers.
Here is UC Davis ASI's Funding year by year. They publish it. They're PROUD of it. Their largest private donor is a climate foundation. Most of their donor money comes in those who would represent sustainability as much (or more than) anything that would make them a giant shadow conspiracy like Marlboro of the 1950's.
But taking a step back. It's best to ask colleges and researchers. How reputable is UC Davis ASI? Can you find me a few that will put their reputation on the line to levy the implied accusation in that NY Times article? I have only met the opposite. This reeks of "antivax movement" to me.