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every tradition or cultural value is an example of indoctrination
Most traditions or cultural values don't demand belief, unlike religion.
why should they be raised to believe in human rights
Because we as a society have decided that these are the values we wish to protect and propagate. We have made no such decisions with regards to religion, in fact likely the opposite.
There's no self-consistent logical framework that would allow one to single out religion in this manner.
I just pointed one out.
Hell, more specifically on the matter of clothing, why is indoctrinating girls into wearing burkas bad but indoctrinationg them into wearing skirts not?
Nobody's advocating indoctrinating them into wearing skirts. I don't see anybody protesting them wearing pants or w/e.