Just use rsync -va (possibly with --chown if you want user/group to be different at the destination and with --delete if you want removed files to be deleted) to continue the copy operation, it automatically takes care of figuring out which files still need to be copied and which are already there.
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Run an md5sum command on the last file in each location and compare. That will tell you if one of them is different and answer your question.
I think the one being currently copied? take a look at https://github.com/coreutils/coreutils/blob/master/src/cp.c :)
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