I've no issues with it on my rooted phone, even during the times when safetynet fails.
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On my rooted LineageOS ROM it works just fine, just gives a warning when starting it for the first time that I am using a "rooted device" and how my "security might be compromised" but it lets you continue and doesn't show it ever again.
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There are no alternative clients for WhatsApp as far as I know.
The only thing worth looking into are Matrix Bridges (or something with a similar name) but it's a paid solution.
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Does it refuse to run if it detects root? Im not rooted but grapheneOS lets me run whatsapp no problem.
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You can use "Hide my apps" from LSPosed, and the Magisk "DenyList" to prevent (most) apps from detecting root.
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