Its easy. If you have a problem, report it. Instead of arguing about it they may have already fixed it.
If you want to run a proprietary app unconfined, do so.
But you also have to admit that reading some git config in a non flatpak directory is actively against the sandboxing principle, and thus requires manually allowing that access.
Sure, flatpaks need more popups that do exactly that.
Dividing "GUI apps" and other packages is easy. Go to a store, if it has an icon, install it via flatpak, if it has no icon, then you may not do that.
Appstream metadata so to speak.
Finally, packaging for Flatpack is a Pain In The Ass
Agreed.
okay maybe stop being so rude? Flatpak is the possibility for a secure system. We see how painfully slow adoption for that is on every Desktop, mac and windows too.
But it is great to have this, and I am sure we could make your Pycharm work by applying that override. The rest has to be done by the developers and it is important to care.
It is the same as with wayland, people need to change their software to ask for permission, follow standards and dont do weird shit. Only then the UX is solved.
And by the way what is stopping you from just using some apps as native system apps, and flatpak for the rest?