Until version 8.8.7 of Notepad++, the developer used a self-signed certificate, which is available in the Github source code. This made it possible to create manipulated updates and push them onto victims, as binaries signed this way cause a warning „Unknown Publisher“. Since v8.8.7, however, Notepad++ relies on a legitimate GlobalSign certificate, and installing its own Notepad++ root certificate is no longer necessary – if such a warning pops up, users should be alarmed.

I don't understand how this is relevant. Unless the attacker has either

(a) somehow acquired the private key of the cert

(b) replaced the cert delivered through the installer

A self signed cert isn't any worse. Both of these attack vectors still work with a public root CA. Or maybe notepad++ just forgot to validate the self signed cert against the one they delivered through their sources, just accepting any non-expired cert? That's just a bug.